Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2023-09-24 20:06:30,033 [501] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2023-09-24 20:06:30,267 [501] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2023-09-24 20:06:30,275 [501] INFO pulse.unloader: ------------------------------------------------------------------------
2023-09-24 20:06:30,277 [501] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2023-09-24 20:06:30,277 [501] INFO pulse.unloader: ------------------------------------------------------------------------
2023-09-24 20:06:30,322 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:30,323 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:30,325 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:30,325 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:30,591 [501] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2023-09-24 20:06:31,222 [501] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2023-09-24 20:06:31,273 [501] INFO pulse.unloader:
Do an intial solve
2023-09-24 20:06:31,405 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:31,406 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:31,407 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:31,408 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:31,408 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:06:32,207 [501] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-09-24 20:06:32,328 [501] DEBUG UFL_LEGACY: Blocks of each mode:
2023-09-24 20:06:32,657 [501] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-09-24 20:07:32,880 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:32,881 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:32,882 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:32,884 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:32,885 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:33,171 [501] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-09-24 20:07:33,291 [501] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:07:33,598 [501] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:07:38,768 [501] INFO pulse.unloader:
Iteration: 0
2023-09-24 20:07:39,060 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:07:39,123 [501] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:07:39,688 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:07:39,695 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:07:39,760 [501] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-09-24 20:07:40,381 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:07:40,451 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:07:40,455 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:07:40,525 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:07:40,527 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:07:40,589 [501] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2023-09-24 20:07:40,846 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:40,847 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:40,849 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:40,851 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:40,852 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:07:41,291 [501] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-09-24 20:07:41,403 [501] DEBUG UFL_LEGACY: Blocks of each mode:
2023-09-24 20:07:41,720 [501] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-09-24 20:08:34,747 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:08:34,748 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:08:34,750 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:08:34,752 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:08:34,754 [501] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-09-24 20:08:34,934 [501] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-09-24 20:08:35,028 [501] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:08:35,273 [501] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-09-24 20:08:39,568 [501] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2023-09-24 20:08:39,798 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:39,801 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:39,859 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:39,861 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:39,923 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:39,924 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:39,976 [501] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2023-09-24 20:08:39,992 [501] INFO pulse.unloader:
Residual: 0.011328623428538194
2023-09-24 20:08:39,993 [501] INFO pulse.unloader:
Iteration: 1
2023-09-24 20:08:40,227 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:40,228 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:40,286 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:40,288 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:40,350 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:40,352 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:40,401 [501] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2023-09-24 20:08:44,258 [501] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2023-09-24 20:08:44,533 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:44,537 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:44,612 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:44,616 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:44,687 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:44,689 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:44,748 [501] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2023-09-24 20:08:44,766 [501] INFO pulse.unloader:
Residual: 0.001698010214540216
2023-09-24 20:08:44,767 [501] INFO pulse.unloader:
Iteration: 2
2023-09-24 20:08:45,040 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:45,042 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:45,112 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:45,114 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:45,182 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:45,184 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:45,247 [501] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2023-09-24 20:08:49,439 [501] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2023-09-24 20:08:49,704 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:49,707 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:49,770 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:49,772 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:49,838 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:49,842 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:49,903 [501] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2023-09-24 20:08:49,921 [501] INFO pulse.unloader:
Residual: 0.00025928769312986966
2023-09-24 20:08:49,922 [501] INFO pulse.unloader:
Iteration: 3
2023-09-24 20:08:50,180 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:50,182 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:50,246 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:50,247 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:50,310 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:50,312 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:50,370 [501] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2023-09-24 20:08:54,304 [501] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2023-09-24 20:08:54,552 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,555 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,615 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,617 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,680 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,681 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,735 [501] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2023-09-24 20:08:54,750 [501] INFO pulse.unloader:
Residual: 3.93130429591956e-05
2023-09-24 20:08:54,751 [501] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2023-09-24 20:08:54,990 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:54,993 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:55,053 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:55,055 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:55,115 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-09-24 20:08:55,117 [501] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()